Genetic and phytochemical analysis of Indonesian black rice cultivars

Journal of Crop Science and Biotechnology - There are many local black rice cultivars spread throughout Indonesia and are only a few of these which formally describe their genetic diversity and...     

Mapping QTL controlling soybean seed sucrose and oligosaccharides in a single family of soybean nested association mapping (SoyNAM) population

The meal value of Soybean for monogastric animals is determined partly by sucrose, raffinose and stachyose. Of these, sucrose is desirable, while raffinose and stachyose are indigestible, causing flatulence and abdominal discomfort. The objective of this study was to identify quantitative trait loci (QTL) controlling seed sucrose, raffinose, and stachyose in a set of 140 SoyNAM (Nested Association Mapping) recombinant inbred lines (RILs), developed from the cross between lines IA3023 and LD02‐4485. A total of 3,038 SNP markers from the Illumina SoyNAM BeadChip SNP were used to map the QTLs for sucrose and the RFOs, raffinose, and stachyose. Significant genotypic differences (p < .001) among RILs were observed for sucrose, raffinose and stachyose contents across years. A 3038 Illumina SoyNAM BeadChip SNPs identified three QTLs for sucrose, one on chromosome 1, explaining 10% variance and two on chromosome 3 each explaining 22%. Raffinose QTL was detected on chromosome 6, explaining 6% variance. The mapped QTLs were novel and spanned regions harbouring candidate genes with roles in plant growth including seed development.     

Rice bran, a potential source of biodiesel production in Indonesia

Biodiesel is a biodegradable, renewable, non-toxic and environmentally friendly alternative fuel. The cost of raw materials comprises 60-88% of the production cost in commercial biodiesel (fatty acid methyl esters, FAMEs) production. Therefore, the use of low-cost raw material as a substrate and an in situ process for biodiesel production are being preferred. In this case, rice bran, which contains 13.5% oil, was an interesting substrate. In situ esterification of high-acidity rice bran with methanol and sulfuric acid catalyst was investigated. The individual and interaction effects of methanol to rice bran ratio, sulfuric acid catalyst concentration and reaction time on purity and recovery of biodiesel were discussed. Our results suggest that under the following operation conditions: methanol to rice bran ratio of 5 mL/g, sulfuric acid concentration in methanol of 1.5 vol.%, and reaction time of 60 min, an in situ esterification operated on rice bran could yield FAMEs with a high purity and recovery. By applying an in situ esterification with n-hexane/water extractions, Indonesia will be succesfull in obtaining biodiesel from rice bran up to 96,000 ton per year.     

Community participation in a social forestry program in Central Java,Indonesia: the effect of incentive structure and social capital

A new social forestry program has been implemented in Java to overcome encroachment of state forests. In this program, the state and local communities jointly manage the state forests and share the benefits of increased forest resource stock and flow as a result of the management. This article aims to investigate the complete incentive structure of the social forestry program and how the incentive structure changes community member participation in forest management. Property rights transfers and economic analyses were employed to analyze the incentive structure. We conclude that although incomplete, the transfer of rights from the state to the community members is a useful approach toward establishing an effective incentive structure and provides a net gain to the community members. The extent of community participation, however, depends not only on the incentive structure but also on the social capital that exists in the community.     

Well-defined multispecies probiotic and enzyme combination outperforms traditional fermented probiotic applications in an intensive Pacific white shrimp,Litopenaeus vannamei (Boone, 1931), culture system

A series of treatments were designed to evaluate the efficacy of feeding commercial multispecies probiotics feeding with enzymes and fermentation process on the growth parameters and culture environment of Pacific white shrimp, Litopenaeus vannamei (Boone, 1931), in an intensive culture system. Commercial multispecies probiotics and enzymes (PEs) were continuously applied in three different doses, namely (i) 0.2, (ii) 0.4, and (iii) 0.6 mg L⁻¹ and designated as 0.2, 0.4, and 0.6 PE during the first 30 days of intensive culture of Pacific white shrimp, L. vannamei (Boone, 1931). The probiotics were continually applied every alternate day, while the enzymes were added every sixth day throughout the trial period. The PE dose for all treated tanks was increased by 0.2 ppm after 30 days of culture and another 0.2 ppm after day 60. Meanwhile, fermentation technique, which has become the common method applied in Indonesia in the control treatment, was added on the same day with the PE group with increasing dosage, following the same trend with the 0.6 PE group. Results showed that the group receiving 0.6 PE showed higher final biomass, higher mean weight, and protein retention efficiency as well as a lower feed conversion ratio compared with the control treatment. Abundance of Vibrio spp. remained below 10³ cfu mL⁻¹ throughout the trial. Water quality indicators TAN, NO₂ N and NO₃ N peaked in weeks 3–5 and then declined after that until the end of the culture period in all tanks. This decline was significantly faster in PE-treated tanks. Multispecies PEs have potential applications in controlling Vibrio spp., maintaining proper water quality condition, and enhancing the growth of shrimp in intensive culture system.     

Characteristics of two duck farming systems in the Mekong Delta of Viet Nam: stationary flocks and moving flocks, and their potential relevance to the spread of highly pathogenic avian influenza

Ducks are considered to play a major role in the spread of highly pathogenic avian influenza (HPAI) H5N1 in Viet Nam, but detailed information on their management is limited. We distinguished two different systems (1) stationary duck flocks that are not commonly driven to rice fields beyond village boundaries and that are confined overnight on farms and (2) moving duck flocks that are intentionally driven to rice fields beyond village boundaries, that are not returning to home farms for extended periods and that are housed overnight in temporary enclosures in rice paddies. A total of 115 stationary and 22 moving flock farmers were interviewed in 2007 in the Mekong Delta of Viet Nam. Moving duck flocks are larger than stationary flocks, which is indicative of their more commercial production. Moving flock farmers apparently are more aware of HPAI risks than stationary flock farmers, as their flocks are more likely fully vaccinated and have less contact with chickens during scavenging. On the other hand, the spread of HPAI virus between birds might be promoted by moving duck flocks as they repeatedly use transport vehicles and numerous rice paddies for scavenging and are often visited by hatchery owners in the field for purchasing duck eggs. In addition, long distances travelled by moving duck flocks might also result in widespread dissemination of HPAI virus. Further studies are necessary to describe HPAI prevalence and travel patterns of moving duck flocks and to explore the moving duck flock network in detail.     

Fine-Scale Movements and Spatial Behaviors of Bear Hunters: Combining GPS With Survey Methods

Traditionally, information on hunter behavior has been obtained from questionnaires, which are useful, but provide limited information on spatial movements and behaviors. We used a global positioning system (GPS) to track movements of black bear hunters and determine if harvest success was influenced by effort (e.g., time spent afield) and spatial behaviors (e.g., distance traveled from roads). Furthermore, we used mail questionnaires to determine whether hunter perceptions of space use and effort differed from reality (GPS data). Most spatial variables did not differ between hunters and study area averages, indicating that hunters did not select for landscape characteristics differently than expected based on availability. The questionnaires were generally unreliable in describing space use, as hunters overestimated distance traveled from roads and underestimated distances traveled while afield. Studies should consider GPS to obtain more accurate assessments of behaviors while afield. When combined with questionnaire information, GPS data can reveal correction factors to improve spatial behavior estimates.     

Market turtle mystery solved in Vietnam

Asian turtles are overharvested for food, medicinal purposes and pets, and most species are now at risk of extinction (‘Asian turtle crisis’). As a result of high levels of trade, some species of Asian turtles are known to science mostly or only from animals found in trade. The Vietnamese box turtle (Cuora picturata) was described in 1998 and is known only from markets. This species is likely to be highly threatened, and identifying the origin of this “market species” is imperative if it is to be conserved. We used evidence from phylogeny, biogeography and trade patterns to focus field searches for this species, and in July 2010–January 2011 found it in the wild at three localities on the Langbian Plateau of southern Vietnam. This discovery provides the first opportunity to conserve the Vietnamese box turtle, and provides hope for determining the wild origin of other rare Asian turtles that remain known only from commercial trade.